Loading required package: optparse Loading required package: data.table Loading required package: reshape2 Attaching package: 'reshape2' The following objects are masked from 'package:data.table': dcast, melt 00:00 37Mb 0.1% Reading /home/ubuntu/piphillin/work/KEGG/rRNA_seqs.fasta 00:00 64Mb 100.0% Reading /home/ubuntu/piphillin/work/KEGG/rRNA_seqs.fasta 00:00 30Mb 0.1% Masking 00:01 30Mb 75.9% Masking 00:01 30Mb 100.0% Masking 00:01 31Mb 0.1% Word stats 00:02 32Mb 60.8% Word stats 00:02 32Mb 100.0% Word stats 00:02 32Mb 100.0% Alloc rows 00:02 110Mb 0.1% Build index 00:03 110Mb 19.1% Build index 00:04 110Mb 63.7% Build index 00:04 110Mb 100.0% Build index 00:04 143Mb 0.1% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 0.0% matched 00:05 145Mb 2.9% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 0.0% matched 00:06 145Mb 17.2% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 3.5% matched 00:07 145Mb 31.5% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.7% matched 00:08 145Mb 46.1% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.6% matched 00:09 145Mb 61.0% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.5% matched 00:10 145Mb 75.4% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.5% matched 00:11 145Mb 89.4% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.3% matched 00:11 145Mb 100.0% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 2.4% matched 00:00 37Mb 0.1% Reading /home/ubuntu/piphillin/work/BioCyc/rRNA_seqs.fasta 00:00 71Mb 100.0% Reading /home/ubuntu/piphillin/work/BioCyc/rRNA_seqs.fasta 00:00 37Mb 0.1% Masking 00:01 37Mb 17.8% Masking 00:01 37Mb 100.0% Masking 00:01 38Mb 0.1% Word stats 00:02 39Mb 15.6% Word stats 00:03 39Mb 70.4% Word stats 00:03 39Mb 100.0% Word stats 00:03 39Mb 100.0% Alloc rows 00:03 141Mb 0.1% Build index 00:04 141Mb 14.1% Build index 00:05 141Mb 47.7% Build index 00:06 141Mb 81.1% Build index 00:06 141Mb 100.0% Build index 00:06 174Mb 0.1% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 0.0% matched 00:07 176Mb 6.7% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 7.7% matched 00:08 176Mb 20.8% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 4.1% matched 00:09 176Mb 33.4% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 3.6% matched 00:10 176Mb 47.8% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 3.8% matched 00:11 176Mb 62.4% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 4.0% matched 00:12 176Mb 76.8% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 4.0% matched 00:13 176Mb 90.8% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 3.6% matched 00:13 176Mb 100.0% Searching Alireza_Kashani_Pour_20170112081933_selectedOtusForPiphillin6789c.fasta, 3.8% matched