install.packages("knitr") install.packages("tidyverse") install.packages("ggpubr") install.packages("ggrepel") install.packages("umap") install.packages("Rtsne") install.packages("ggbiplot") install.packages("vegan") install.packages("FactoMineR") install.packages("factoextra") install.packages("zCompositions") devtools::install_github("csgroen/ggheatmapper") if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("microbiome") BiocManager::install("phyloseq")