PIG-PARADIGM Metagenomics Workshop

Welcome

Welcome to the PIG-PARADIGM metagenomics workshop at WUR, organized by University of California Davis and University of Copenhagen. You will find a collection of links to relevant material below.

Introduction to metagenomics

  • The slides for the metagenomics intro presentation is here

Introduction to UNIX terminal

  • The slides and/or content for the UNIX intro presentation is here

Recovering and annotating high-quality genomes from metagenomes

  • Material for the hands-on session 1 is here
  • Judit's presentation is here

Taxonomy, comparative metagenomics and AMR

  • Material for the hands-on session 2 from Anneliek is here